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Maybe pneumaticity is variable because it’s built on a shaky foundation

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In my recent visit to the LACM herpetology collection, I was interested to note that almost every croc, lizard, and snake vertebra I saw had a pair of neurovascular foramina on either side of the centrum, in “pleurocoel” position. You can see these in the baby Tomistoma tail, above. Some vertebrae have a big foramen, some have a small foramen, and some have no visible foramen at all. Somehow I’d never noticed this before.

This is particularly interesting in light of the observation from birds that pneumatic diverticula tend to follow nerves and vessels as they spread through the body. Maybe we find pneumatic features where we do in dinosaurs and pterosaurs because that’s where the blood vessels were going in the babies. Also, these neurovascular foramina in extant reptiles are highly variable in size and often asymmetric – sound familiar?

It should. Caudal pneumaticity in the tail of Giraffatitan MB.R.5000. Dark blue vertebrae are pneumatic on both sides, light blue vertebrae only have fossae on the right side. Wedel and Taylor (2013b: Figure 4).

I am starting to wonder if some of the variability we associate with pneumaticity is just the variability of soft tissue, full stop. Or if pneumaticity is variable because it developmentally follows in the footsteps of the blood vessels, which are themselves inherently variable. That seems like a promising line of inquiry. And also something I should have though of a lot sooner.


Some noodling about pneumaticity and body size

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In a comment on the last post, Mike wrote, “perhaps the pneumaticity was intially a size-related feature that merely failed to get unevolved when rebbachisaurs became smaller”.

Caudal pneumaticity in saltasaurines. Cerda et al. (2012: fig. 1).

Or maybe pneumaticity got even more extreme as rebbachisaurids got smaller, which apparently happened with saltasaurines  (see Cerda et al. 2012 and this post).

I think there is probably no scale at which pneumaticity isn’t useful. Like, we see a saltasaurine the size of a big horse and think, “Why does it need to be so pneumatic?”, as if it isn’t still one or two orders of magnitude more massive than an ostrich or an eagle, both of which are hyperpneumatic even though only one of them flies. Even parakeets and hummingbirds have postcranial pneumaticity.

Micro CT of a female Anna’s hummingbird. The black tube in the middle of the neck is the supramedullary airway. Little black dots in the tiny cervical centra are air spaces.

We’re coming around to the idea that the proper way to state the dinosaur size question is, “Why are mammals so lousy at being big on land?” Similarly, the proper way to state the pneumaticity question is probably not “Why is small sauropod X so pneumatic?”, but rather “Why aren’t some of the bigger sauropods even more pneumatic?”

Another thought: we tend to think of saltsaurines as being crazy pneumatic because they pneumatized their limb girdles and caudal chevrons (see Zurriaguz et al. 2017). Those pneumatic foramina are pretty subtle – maybe their apparent absence in other sauropod clades is just because we haven’t looked hard enough. Lots of things have turned out to be pneumatic that weren’t at first glance – see Yates et al. (2012) on basal sauropodomorphs and Wedel and Taylor (2013b) on sauropod tails, for example.

Back of the skull of a bighorn sheep, showing the air spaces inside one of the broken horncores.

Or, even more excitingly, if the absence is genuine, maybe that tells us something about sauropod biomechanics after all. Maybe if you’re an apatosaurine or a giant brachiosaurid, you actually can’t afford to pneumatize your coracoid, for example. One of my blind spots is a naive faith that any element can be pneumatized without penalty, which I believe mostly on the strength of the pneumatic horncores of bison and bighorn sheep. But AFAIK sauropod girdle elements don’t have big marrow cavities for pneumaticity to expand into. Pneumatization of sauropod limb girdles might have come at a real biomechanical cost, and therefore might have only been available to fairly small animals. (And yeah, Sander et al. 2014 found a pneumatic cavity in an Alamosaurus pubis, but it’s not a very big cavity.)

As I flagged in the title, this is noodling, not a finding, certainly not certainty. Just an airhead thinking about air. The comment thread is open, come join me.

References

Our presentations are up at the 1st Palaeo Virtual Congress

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The 1st Palaeontological Virtual Congress is underway now, and will run through December 15. Mike and I have two presentations up:

“What do we mean by the directions ‘cranial’ and ‘caudal’ on a vertebra?” by Mike and me, which consists of a video Mike made presenting a slide show that he put together. The presentation sums up our thinking following the series of vertebral orientation posts here earlier this summer and fall, which are all available here.

“Reconstructing an unusual specimen of Haplocanthosaurus using a blend of physical and digital techniques” by me and a gang of WesternU-based collaborators, including Jessie Atterholt and Thierra Nalley, both of whom you saw in our recent pig-hemisecting adventures. Almost everything I’ve written on this blog about Haplocanthosaurus in 2018 was part of the run-up to this presentation (except, somewhat ironically, the post about pneumaticity), which also includes quite a bit that I haven’t put on the blog yet. So even if you follow SV-POW!, the 1PVC slideshow should have plenty of stuff you haven’t seen yet.

IF you can see it–you have to be a registered 1PVC ‘attendee’ to log in to the site and see the presentations. So probably you are either already registered and this post is old news, or not registered and this post seems useless. Why would I bother telling you about stuff you can’t see?

The answer is that neither Mike or I intend for our work to disappear when 1PVC comes to an end on December 15. Both of us are planning to put our abstracts and slide decks up as PeerJ Preprints, which is our default move for conference presentations these days (e.g., this, this, and this). I believe Mike is also going to post his video to YouTube. So the work will not only live on after the congress is over, it will jump to a much broader audience. We’re looking forward to letting everyone see what we’ve been up to, and I’m sure we’ll have some more things to say here when that happens.

So, er, go see our stuff if you’re a 1PVC attendee, and if you’re not, hang in there, we’ll have that stuff out to you in a few days. UPDATE: The Haplo presentation is up now (link).

The Haplocanthosaurus presentation from the 1st Palaeo Virtual Congress is now a PeerJ Preprint

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If you were curious about the Wedel et al. presentation on the Snowmass Haplocanthosaurus at the 1st Palaeo Virtual Congress but didn’t attend the event, it is now preserved for posterity and freely available to the world as a PeerJ Preprint (as promised). Here’s the link.

I’ll have much more to say about this going forward, but for now here are slides 20 and 21 on the intervertebral joint spaces. This is obviously just the same vert cloned three times and articulated with itself. With the digital rearticulation of the reconstructed and retrodeformed caudal series still in progress, we cloned caudal 3, the only vertebra that preserves both sets of zygapophyses, to get a rough estimate of the sizes and shapes of the soft tissues that filled the intervertebral spaces and neural canal.

The reconstructed intervertebral discs (in blue) are very crude and diagrammatic. The reason I’m putting these particular slides up is to get the cited references out in the open on the blog, to start correcting the misapprehension that all non-mammalian amniotes have exclusively synovial intervertebral joints (see the discussion in the comments on this post). In the list below I’m including Banerji (1957), which is not cited in the presentation but which I did cite in that comment thread; it’s an important source and at least for now it is a free download. These refs are just the tip of a very big iceberg. One of my goals for 2019 is to do a series of posts reviewing the extensive literature on amphiarthrodial (fibrocartilaginous) intervertebral joints in living lepidosaurs and birds. Stay tuned!

And please go have a look at the presentation if you are at all interested or curious. As we said in the next to last slide, “this research is ongoing, and we welcome your input. If there are facts or hypotheses we haven’t considered but should, please let us know!”

References

How our week at the Carnegie Museum went

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In a word, amazingly. After 6 days (counting public galleries last Sunday), 4300 photos, 55 videos, dozens of pages of notes, and hundreds of measurements, we’re tired, happy, and buzzing with new observations and ideas.

We caught up with some old friends. Here Mike is showing an entirely normal and healthy level of excitement about meeting CM 584, a specimen of Camarasaurus from Sheep Creek, Wyoming. You may recognize this view of these dorsals from Figure 9 in our 2013 PeerJ paper.

We spent an inordinate amount of time in the public galleries, checking out the mounted skeletons of Apatosaurus and Diplodocus (and Gilmore’s baby Cam, and the two tyrannosaurs, and, and…).

I had planned a trip to the Carnegie primarily to have another look at the Haplocanthosaurus holotypes, CM 572 and CM 879. I was also happy for the chance to photograph and measure these vertebrae, CM 36034, which I think have never been formally described or referred to Haplocanthosaurus. As far as I know, other than a brief mention in McIntosh (1981) they have not been published on at all. I’m planning on changing that in the near future, as part of the larger Haplocanthosaurus project that now bestrides my career like a colossus.

The real colossus of the trip was CM 555, which we’ve already blogged about a couple of times. Just laying out all of the vertebrae and logging serial changes was hugely useful.

Incidentally, in previous posts and some upcoming videos, we’ve referred to this specimen as Brontosaurus excelsus, because McIntosh (1981) said that it might belong to Apatosaurus excelsus. I was so busy measuring and photographing stuff that it wasn’t until Friday that I realized that McIntosh made that call because CM 555 is from the same locality as CM 563, now UWGM 15556, which was long thought to be Apatosaurus excelsus but which is now (i.e., Tschopp et al. 2015) referred to Brontosaurus parvus. So CM 555 is almost certainly B. parvus, not B. excelsus, and in comparing the specimen to Gilmore’s (1936) plates of CM 563, Mike and I thought they were a very good match.

Finding the tray of CM 555 cervical ribs was a huge moment. It added a ton of work to our to-do lists. First we had to match the ribs to their vertebrae. Most of them had field numbers, but some didn’t. Quite a few were broken and needed to be repaired – that’s what I’m doing in the above photo. Then they all had to be measured and photographed.

It’s amazing how useful it was to be able to reassociate the vertebrae with their ribs. We only did the full reassembly for c6, in part because it was the most complete and perfect of all of the vertebrae, and in part because we simply ran out of time. As Mike observed in his recent post, it was stunning how the apatosaurine identity of the specimen snapped into focus as soon as we could see a whole cervical vertebra put back together with all of its bits.

We also measured and photographed the limb bones, including the bite marks on the radius (above, in two pieces) and ulna (below, one piece). Those will of course go into the description.

And there WILL BE a description. We measured and photographed every element, shot video of many of them, and took pages and pages of notes. Describing even an incomplete sauropod skeleton is a big job, so don’t expect that paper this year, but it will be along in due course. CM 555 may not be the most complete Brontosaurus skeleton in the world, but our ambition is to make it the best-documented.

In the meantime, we hopefully left things better documented than they had been. All of the separate bits of the CM 555 vertebrae – the centra, arches, and cervicals ribs – now have the cervical numbers written on in archival ink (with permission from collections manager Amy Henrici, of course), so the next person to look at them can match them up with less faffing about.

We have people to thank. We had lunch almost every day at Sushi Fuku at 120 Oakland Avenue, just a couple of blocks down Forbes Avenue from the museum. We got to know the manager, Jeremy Gest, and his staff, who were unfailingly friendly and helpful, and who kept us running on top-notch food. So we kept going back. If you find yourself in Pittsburgh, check ’em out. Make time for a sandwich at Primanti Bros., too.

We owe a huge thanks to Calder Dudgeon, who took us up to the skylight catwalk to get the dorsal-view photos of the mounted skeletons (see this post), and especially to Dan Pickering, who moved pallets in collections using the forklift, and moved the lift around the mounted skeletons on Tuesday. Despite about a million ad hoc requests, he never lost patience with us, and in fact he found lots of little ways to help us get our observations and data faster and with less hassle.

Our biggest thanks go to collections manager Amy Henrici, who made the whole week just run smoothly for us. Whatever we needed, she’d find. If we needed something moved, or if we needed to get someplace, she’d figure out how to do it. She was always interested, always cheerful, always helpful. I usually can’t sustain that level of positivity for a whole day, much less a week. So thank you, Amy, sincerely. You have a world-class collection. We’re glad it’s in such good hands.

What’s next? We’ll be posting about stuff we saw and learned in the Carnegie Museum for a long time, probably. And we have manuscripts to get cranking on, some of which were already gestating and just needed the Carnegie visit to push to completion. As always, watch this space.

References

Cabinet of curiosities: Jessie Atterholt’s office

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My friend and frequent collaborator Jessie Atterholt has her office in the next building over from mine. When you walk in, you see something that looks approximately like this. Not exactly like this, because I took these photos in February and she’s changed a few things (and I’m rubbish about getting stuff posted in a timely fashion).

The last time I showed an office full of amazing stuff like this, it was Peter Dodson’s. It will come as no surprise that Jessie was Peter’s student at UPenn before she went to Berkeley for her PhD.

The far case holds mostly books and skulls. Dr. A has her own plastination setup for making preserved organs and organisms, and the snake on the second shelf here is one that she prepped herself. One side of the snake still has the skin on, the other half has been skinned to show the muscles. This is crunch week for me so I don’t have time to ID all of the stuff, but alert readers should have no problem spotting some digitally-resurrected Haplocanthosaurus bits.

Mostly skulls on the middle rack. The sirenian skull on the second shelf and the cave bear on the fourth are both casts, but almost everything else is real bone. The bighorn sheep on the middle shelf is a natural mummy.

Here’s a close-up of the top shelf. Other than some 3D-printed human skull bones sitting in front of the brain slice on the left, everything here is real bone, including the lion, baboon, and human skulls, and the giraffe cervicals winding across the top. Jessie’s been collecting since she was a kid and the African megafauna are gifts from a globe-trotting family friend.

The upper shelves here have quite a few of Jessie’s plastinated specimens, both whole organisms and things like hearts and kidneys from various critters.

A close-up of some of Jessie’s coolest anatomical preparations. In back is an internal cast of the lungs and bronchial tree of a cat. The baby rattlesnake died after eating a proportionally gigantic lizard — I was dumb and forgot to flip the snake over to show the lizard inside, plastinated along with its predator. The ground squirrel on the right is another half-fleshed, half-skinned plastinate, and the mouse up front is a classic dissection presentation, preserved forever through plastination.

I’ve heard it said that the difference between a collector and a hoarder is curation. As someone who definitely lurks more on the hoarder end of that spectrum (to paraphrase Dave Barry, if you could see my office you’d be blinded or driven insane), I’m pretty darned jealous of both the breadth of Jessie’s collection, and the skill and taste with which it is displayed. She’s featured some of these specimens on her Instagram, which I strongly recommend.

The Atterholt & Wedel and plain-old-Wedel talks from SVPCA 2019 are now PeerJ Preprints

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I’ll have more to say about both of these in the near future, but for now suffice it to say that this (link):

and this (link):

are available for your perusal. Not just the abstracts, but the slide decks as well, just as Mike did for his talk on Jensen’s Big Three sauropods (link).

Jessie is also posting her talk a few slides at a time on her Instagram, with some helpful unpacking, so that’s worth a look even if you have the slides already. That stream of posts starts here.

Things I loved about SVPCA 2019

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As usual I came back from SVPCA to a mountain of un-dealt-with day-job work, which is why it’s taken me so long to get this post done and up. I wanted to get it posted as quickly as I could decently arrange, because I had a fantastic time at this year’s meeting and I wanted to document a few reasons why, both to thank this year’s hosts and to perhaps inspire the organizers of future meetings.

A shot from the back of the banquet-hall-turned-lecture-theater during Mike’s talk.

1. Space

This year’s presentation space was unlike any I can remember from previous SVPCAs. Instead of being in a lecture hall, talks were held in a big ballroom, and attendees sat in chairs at big circular banquet tables. This had a LOT of positive effects: no edging along long rows of seats to get in or out between talks, easy discussion around and between the tables at the breaks, the opportunity for a group of people to sit together as a group (vs a line or same-facing block), plenty of space to set notebooks, laptops, papers, pens, drinks, etc. I realize that meeting space is probably one of the things that conference organizers have the least control over, but at least from what I saw this year I’d say the ballroom model works even better than the lecture hall model, so that’s a possible consideration for the future.

2. Time

Owing to the smaller-than-normal number of abstract submissions — possibly a function of the meeting being on an island rather than the, uh, somewhat larger island of Great Britain — everyone who asked for a talk got one, and the talk slots were long enough for full 15-minute talks and 5 minutes for questions. So the meeting seemed decompressed. No-one really rushed through their talks (although Mike did speak very quickly), and there was usually plenty of time for questions, and the all-important coffee top-up or between-breaks bio-refresh. I know that a fuller conference is in some ways a healthier conference, and I still maintain that if talks have to be trimmed at future meetings, established players like myself should take the hit so students and early-career-researchers can have some runway, but I still appreciated the more relaxed pace of this meeting.

3. Food and drink

Food and drink service was probably the best that I have experienced at a paleo conference, full stop. I wish I had taken a photo of the ranked rows of coffee cups on saucers, because they never ran out. I don’t think we ever ran out of coffee, either. A lunch of sandwiches, crisps, veggies, and hummus (edit: and cheese, lots of beautiful cheese!) was provided on Thursday and Friday all three days of the conference, and from what I saw, the lunches ran down to a bare handful of sandwiches at the very end but didn’t quite run out — and this was after everyone had ample opportunity to go back for more. Simply an outstanding job.

If I had one quibble, it was that the bar at Cowes Yacht Haven opened about five minutes before the start of Don Henderson’s Fox Lecture on Wednesday evening, without warning and after a lot of people (Mike and me included) had brought in drinks from outside, which we were then told we couldn’t drink on the premises. I realize that the opening and closing of the yacht club bar was probably outside the control of the organizers, but it was an annoyance for those of us who wanted to have a drink with the evening lecture.

4. Exhibitors

I admit to being disappointed when I realized that the meeting would be at Cowes rather than near the Dinosaur Isle museum in Sandown. We did get to visit the museum for the Tuesday evening icebreaker, but other than that we were in a different town entirely. The organizers’ clever solution was to bring the fossils to the paleontologists: several local collectors brought fossils for us to pore over on breaks and during poster time. This was particularly great for Mike, Jessie, and me, since so many of the fossils on display were from sauropods. Jessie and I were able to recognize neural canal ridges in the vertebrae of a rebbachisaurid for the first time, and we were able to use a brachiosaur caudal to demonstrate the ridges to Femke Holwerda, who then told us she’d seen them in a cetiosaur caudal. So our research made meaningful advancements because of the specimens on display, and we made useful contacts.

Speaking of Femke, her big Patagosaurus redescription has been accepted for publication at an OA outlet, so look for that most-welcome work in the not-too-distant future.

There were also paleoartists among the exhibitors, including John Sibbick, Mark Witton, and Luis Rey, among others, including some local artists. I picked up a nice print of a hand-drawn sauropod caudal by Trudie Wilson (this Trudie Wilson, not that Trudie Wilson, although I’m sure she’s a wonderful person too), which I need to do a whole post about, and will soon. I can’t remember now who proposed it, but someone remarked in one of the open sessions about how nice it was to have so much paleoart on display, and that maybe that was something that future meetings could lean into, including having paleoartists give talks about their art. That’s not unprecedented — John Conway and Bob Nicholls have both given presentations on paleoart at previous meetings, either in regular sessions or at evening social functions — but it is a great idea, and one I heartily endorse.

5. Proximity to everything else

Mike did sterling work finding an AirBnB house for a bunch of us (Mike, Darren, Mark Evans, Femke Holwerda, Jeff Liston, Mark Witton, Georgia Witton-Maclean, and Vicki and London and me) that was 300 feet from the entrance to Cowes Yacht Haven and about 700 feet from the banquet hall where the talks were held. I don’t think I’ve ever had such a short walk between my lodgings and the talk venue, even when I’ve stayed in the hotel where the conference was being held. There was also a Sainsbury’s grocery store, a bank of ATMs, and a bunch of restaurants within, seriously, a two-minute walk of the venue. I realize that this was also a lucky circumstance, not readily repeatable for other meetings that take place in museums or university lecture halls at some remove from commercial districts, but it sure was nice. If you had ten minutes, you could legit pop out to Sainsbury’s for some crisps or a beer, and be back at your seat with time to spare.

6. Loot

This one is purely personal, and mostly outside the organizers’ control. (Although they did carelessly put those exhibitors right in the path of my wallet, which fortunately was only running at about Category 3 this trip.) I’m only listing it here to guilt me into finishing the post (or posts) about the items I acquired on the trip, but folks, I did all right. More on that later.

So, a huge thank-you to the organizers of this year’s SVPCA for pulling off such a comfortable and enjoyable meeting. It was a gem. For more on what it was like, please see this post by Emma Nicholls, Deputy Keeper of Natural History at London’s Horniman Museum. If you know of other post-SVPCA conference reviews or retrospectives, please post them in the comments.


Checking out Isle of Wight rebbachisaurid vertebrae at SVPCA 2019

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This awesome photo was taken in the SVPCA 2019 exhibit area by Dean Lomax (L). On the right, Jessie Atterholt, me, and Mike are checking out some Isle of Wight rebbachisaurid vertebrae prepped by Mick Green, who is juuuust visible behind Dean. Jessie’s holding a biggish (as rebbachisaurids go) dorsal or caudal centrum and partial arch, me a lovely little cervical, and Mike an astonishingly delicate and beautiful dorsal. You can see behind us more tables full of awesome fossils, and there were more still across the way, behind Dean and Mick. I was going to throw this photo into the last post to illustrate the exhibit area, but by the time the caption had hit three lines long, I realized it needed a post of its own.

Photo courtesy of Dean, and used with permission. Mark your calendars: on Sunday, Oct. 13, Dean will be speaking at TEDx Doncaster, with a talk titled, “My unorthodox path to success: how my passion for the past shaped my future”. You can follow the rest of Dean’s gradual conquest of the paleosphere through his website, http://www.deanrlomax.co.uk/.

Our vertebral orientation paper is up as a preprint

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Regular readers will remember that we followed up our 1VPC talk about what it means for a vertebra to be horizontal by writing it up as a paper, and doing it in the open. That manuscripts is now complete, and published as a preprint (Taylor and Wedel 2019).

Taylor and Wedel (2018: Figure 5). Haplocanthosaurus sp. MWC 8028, caudal vertebra ?3, in cross section, showing medial aspect of left side, cranial to the right, in three orientations. A. In “articular surfaces vertical” orientation (method 2 of this paper). The green line joins the dorsal and ventral margins of the caudal articular surface, and is oriented vertically; the red line joins the dorsal and ventral margins of the cranial articular surface, and is nearly but not exactly vertical, instead inclining slightly forwards. B. In “neural canal horizontal” orientation (method 3 of this paper). The green line joins the cranial and caudal margins of the floor of the neural canal, and is oriented horizontally; the red line joins the cranial and caudal margins of the roof of the neural canal, and is close to horizontal but inclined upwards. C. In “similarity in articulation” orientation (method 4 of this paper). Two copies of the same vertebra, held in the same orientation, are articulated optimally, then the group is rotated until the two are level. The green line connects the uppermost point of the prezygapophyseal rami of the two copies, and is horizontal; but a horizontal line could join the two copies of any point. It happens that for this vertebra methods 3 and 4 (parts B and C of this illustration) give very similar results, but this is accidental.

The preprint has all the illustrations and their captions at the back of the PDF. If you prefer to have them inline in the text, where they’re referenced — and who wouldn’t? — you can download a better version of the manuscript from the GitHub archive.

By the way, you may have noticed that what started our written in Markdown has mutated into an MS-Word document. Why? Well, because journals won’t accept submissions in Markdown. It eas a tedious and error-prone job to convert the Markdown into MS-Word, and not one I am keen to repeat. For this reason, I think I am unlikely to use Markdown again for papers.

References

  • Taylor, Michael P., and Mathew J. Wedel. 2019. What do we mean by the directions “cranial” and “caudal” on a vertebra? PeerJ PrePrints 7:e27437v2. doi:10.7287/peerj.preprints.27437v2

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The Day of the Dinosaur, and the legend of the regrown sauropod tail

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Two professionals, hard at work.

After this year’s SVPCA, Vicki and London and I spent a few days with the Taylor family in the lovely village of Ruardean. It wasn’t all faffing about with the Iguanodon pelvis, the above photo notwithstanding. Mike and I had much to discuss after the conference, in particular what the next steps might be for the Supersaurus project. Mike has been tracking down early mentions of Supersaurus, and in particular trying to determine the point at which Jensen decided that it might be a diplodocid rather than a brachiosaurid. I recalled that Gerald Wood discussed Supersaurus in his wonderful 1982 book, The Guinness Book of Animal Facts and Feats. While on the track of Supersaurus, I stumbled across this amazing claim in the section on Diplodocus (Wood 1982: p. 209):

According to De Camp and De Camp (1968) these giant sauropods may have been able to regenerate lost parts, and they mention another skeleton collected in Wyoming which appeared to have lost about 25 per cent of its tail to a carnosaur and then regrown it — along with 21 new vertebrae!

De Camp and De Camp (1968) is a popular or non-technical book, The Day of the Dinosaur. Used copies can be had for a song, so I ordered one online and it was waiting for me when I got back to California.

The Day of the Dinosaur is an interesting book. L. Sprague De Camp and Catherine Crook De Camp embodied the concept of the “life-long learner” before there was a buzzword to go with it. He had been an aerospace engineer in World War II, and she had been an honors graduate and teacher, before they turned to writing full time. Individually and together, they produced a wide range of science fiction, fantasy, and nonfiction books over careers that spanned almost six decades. The De Camps’ writing in The Day of the Dinosaur is erudite in range but conversational in style, and they clearly kept up with current discoveries. They also recognized that science is a human enterprise and that, like any exploratory process, it is marked by wildly successful leaps, frustrating wheel-spinning, and complete dead ends. I was pleasantly surprised to find that the authors were completely up to speed on plate tectonics, an essentially brand-new science in 1968, and they explain it as an alternative to older theories about immensely long land bridges or sunken continents.

At the same time, the book arrived just before the end-of-the-1960s publications of John Ostrom and Bob Bakker that kicked off the Dinosaur Renaissance, so there’s no mention of warm-blooded dinosaurs. The De Camps’ sauropods and duckbills are still swamp-bound morons, “endlessly dredging up mouthfuls of soft plant food and living out their long, slow, placid, brainless lives” (p. 142), stalked by ‘carnosaurs’ that were nothing more than collections of teeth relentlessly driven by blind instinct and hunger. The book is therefore an artifact of a precise time; there was perhaps a year at most in the late 1960s when authors as technically savvy as the De Camps would have felt obliged to explain plate tectonics and its nearly-complete takeover of structural geology (which had just happened), but not to comment on the new and outrageous hypothesis of warm-blooded, active, terrestrial dinosaurs (which hadn’t happened yet).

The book may also appeal to folks with an interest in mid-century paleo-art, as the illustrations are a glorious hodge-podge of Charles R. Knight, Neave Parker, photos of models and mounted skeletons from museums, life restorations reproduced from the technical literature, and original art produced for the book, including quite a few line drawings by one L. Sprague De Camp. Roy Krenkel even contributed an original piece, shown above (if you don’t know Krenkel, he was a contemporary and sometime collaborator of Al Williamson and Frank Frazetta, and his art collection Swordsmen and Saurians is stunning and still gettable at not-completely-ruinous prices; I’ve had mine since about 1997).

ANYWAY, as entertaining as The Day of the Dinosaur is, it doesn’t do much to help us regenerate the tale of the regenerated tail. Here’s the entire story, from page 114:

Sauropods, some students think, had great powers of regenerating lost parts. One specimen from Wyoming is thought to have lost the last quarter of its tail and regrown it, along with twenty-one new tail vertebrae. That is better than a modern lizard can do; for the lizard, in regenerating its tail, grows only a stumpy approximation of the original, without new vertebrae.

That’s it. No sources mentioned or cited, so no advance over Wood in terms of tracking down the origin of the story.

Massospondylus tail with traumatic amputation at caudal 25 (Butler et al. 2013: fig. 1A).

To be clear, I don’t really think there is a sauropod that regrew its tail, especially since we have evidence for traumatic tail amputation without regeneration in the basal sauropodomorph Massospondylus (Butler et al. 2013), in the theropod Majungasaurus (Farke and O’Connor 2007), and in a hadrosaur (Tanke and Rothschild 2002). But I would love to learn how such a story got started, what the evidence was, how it was communicated, and most importantly, how it took on a life of its own.

If anyone knows any more about this, I’d be very grateful for any pointers. The comment thread is open.

References

  • Butler, R. J., Yates, A. M., Rauhut, O. W., & Foth, C. 2013. A pathological tail in a basal sauropodomorph dinosaur from South Africa: evidence of traumatic amputation? Journal of Vertebrate Paleontology 33(1): 224-228.
  • De Camp, L. S., and De Camp, C. C. 1968. The Day of the Dinosaur. Bonanza Books, New York, 319 pp.
  • Farke, A. A., & O’Connor, P. M. 2007. Pathology in Majungasaurus crenatissimus (Theropoda: Abelisauridae) from the Late Cretaceous of Madagascar. Journal of Vertebrate Paleontology, 27(S2): 180-184.
  • Krenkel, R. G. 1989. Swordsmen and Saurians: From the Mesozoic to Barsoom. Eclipse Books, 152 pp.
  • Tanke, D. H., & Rothschild, B. M. 2002. DINOSORES: An annotated bibliography of dinosaur paleopathology and related topics—1838-2001. Bulletin of the New Mexico Museum of Natural History and Science, vol. 20.
  • Wood, G. L. 1982. The Guinness Book of Animals Facts & Feats (3rd edition). Guinness Superlatives Ltd., Enfield, Middlesex, 252 pp.

The Snowmass Haplocanthosaurus project is now a museum exhibit

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A life-size silhouette of the Snowmass Haplocanthosaurus, with Thierra Nalley, me, and Jessie Atterholt for scale. Photo by Jeremiah Scott.

Tiny Titan, a temporary exhibit about the Snowmass Haplocanthosaurus project, opened at the Western Science Center in Hemet, California, last night. How? Why? Read on.

Things have been quieter this year on the Haplo front than they were in 2018, for many reasons. My attention was pulled away by a lot of teaching and other day-job work–we’re launching a new curriculum at the med school, and that’s eaten an immense amount of time–and by some very exciting news from the field that I can’t tell you about quite yet (but watch this space). Things are still moving, and there will be a paper redescribing MWC 8028 and all the weird and cool things we’ve learned about it, but there are a few more timely things ahead of it in the queue.

One of the things going on behind the scenes this year is that Jessie Atterholt, Thierra Nalley, and I have been working with Alton Dooley, the director of the Western Science Center, on this exhibit. Alton has had a gleam in his eye for a long time of using the WSC’s temporary exhibit space to promote the work of local scientists, and we had the honor of being his first example. He also was not fazed by the fact that the project isn’t done–he wants to show the public the process of science in all of its serendipitous and non-linear glory, and not just the polished results that get communicated at the end.

Everything’s better cut in half. Photo by Jessie Atterholt.

Which is not to say that the exhibit isn’t polished. On the contrary, it looks phenomenal. Thanks to a loan from Julia McHugh at Dinosaur Journey in Colorado, most of the real fossils are on display. We’re only missing the ribs and most of the sacrum, which is too fragmentary and fragile to come out of its jacket. As you can see from the photo up top, there is a life-size vinyl silhouette of the Snowmass Haplo, with 3D prints of the vertebrae in approximate life position. Other 3D prints show the vertebrae before and after the process of sculpting, rescanning, and retrodeformation, as described in our presentation for the 1st Palaeontological Virtual Congress last year (that slideshow is a PeerJ Preprint, here). The exhibit also includes panels on “What is Haplocanthosaurus” and its relationships, on pneumaticity in sauropods, on the process of CT scanning and 3D modeling, and on the unusual anatomical features of the Snowmass specimen. The awesome display shown above, with the possibly-bumpy spinal cord and giant intervertebral discs reconstructed, was all Alton–he did the modeling, printing, and assembly himself.

Haplo vs Bronto. Thierra usually works on the evolution and development of the vertebral column in primates, so I had to show her how awesome vertebrae can be when they’re done right. Photo by Brittney Stoneburg.

My favorite thing in the exhibit is this striking comparison of one the Snowmass Haplo caudals with a proximal caudal from the big Oklahoma apatosaurine. This was Alton’s idea. He asked me if I had any photos of caudal vertebrae from really big sauropods that we could print at life size to compare to MWC 8028, and my mind went immediately to OMNH 1331, which is probably the second-largest-diameter vertebra of anything from all of North America (see the list here). It was also Alton’s idea to fill in the missing bits using one of Marsh’s plates of Brontosaurus excelsus from Como Bluff in Wyoming. It’s a pretty amazing display, and it turns out to have been a vehicle for discovery, too–I didn’t realize until I saw the verts side-by-side that the neural canal of the Snowmass Haplo caudal is almost as big as the neural canal from the giant apatosaurine caudal. It’s not a perfect comparison, because the OMNH fossil doesn’t preserve the neural canal, and the Como specimen isn’t that big, but proportionally, the Snowmass Haplo seems to have big honkin’ neural canals, not just at the midpoint (which we already knew), but all the way through. Looks like I have some measuring and comparing to do.

(Oh, about the title: we don’t know if the Snowmass Haplo was fully grown or not, but not all haplocanthosaurs were small. The mounted H. delfsi in Cleveland is huge, getting into Apatosaurus and Diplodocus territory. Everything we can assess in the Snowmass Haplo is fused, for what that’s worth. We have some rib chunks and Jessie will be doing histo on them to see if we can get ontogenetic information. I’ll keep you posted.)

Brian’s new Haplocanthosaurus restoration, along with some stinkin’ mammals. Photo by Jessie Atterholt.

Brian Engh contributed a fantastic life restoration of Haplocanthosaurus pro bono, thanks to this conversation, which took place in John Foster’s and ReBecca Hunt-Foster’s dining room about a month ago:

Brian: What are you drawing?

Me: Haplocanthosaurus.

Brian: Is that for the exhibit?

Me: Yup.

Brian (intense): Dude, I will draw you a Haplocanthosaurus.

Me: I know, but you’re a pro, and pros get paid, and we didn’t include a budget for paleoart.

Brian (fired up): I’m offended that you didn’t just ask me to draw you a Haplocanthosaurus.

Then he went to the Fosters’ couch, sat down with his sketchbook, and drew a Haplocanthosaurus. Not only is it a stunning piece on display in the exhibit, there are black-and-white printouts for kids to take and color (or for adults to take to their favorite tattoo artists, just sayin’). [Obligatory: this is not how things are supposed to work. We should all support original paleoart by supporting the artists who create it. But Brian just makes so damn many monsters that occasionally he has to kick one out for the heck of it. Also, I support him on Patreon, and you can, too, so at a stretch you could consider this the mother of all backer rewards.]

One special perk from the opening last night: Jessica Bramson was able to attend. Who’s that, you ask? Jessica’s son, Mike Gordon, found the first piece of bone from the Snowmass Haplo on their property in Colorado over a decade ago. Jessica and her family spent two years uncovering the fossils and trying to get paleontologists interested. In time she got in touch with John Foster, and the rest is history. Jessica lives in California now, and thanks to John’s efforts we were able to invite her to the exhibit opening to see her dinosaur meet the world. Stupidly, I did not get any photos with her, but I did thank her profusely.

A restored, retrodeformed caudal of the Snowmass Haplocanthosaurus, 3D-printed at life size for the exhibit. Photo swiped from the WSC Facebook page.

I owe a huge thanks to Alton Dooley for taking an interest in our work, and to the whole WSC crew for their hard work creating and promoting the exhibit. You all rock.

The exhibit will run through the end of March, 2020, at least. I deliberately did not show most of it, partly because I was too busy having fun last night to be diligent about taking photos, but mostly because I want you to go see it for yourself (I will do a retrospective post with more info after the exhibit comes down, for people who weren’t able to see it in person). If you make it out to Hemet, I hope you have half as much fun going through the exhibit as we did making it.

Please review our new paper on pneumatic variation in sauropod vertebrae!

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We’ve noted many times over the years how inconsistent pneumatic features are in sauropod vertebra. Fossae and formamina vary between individuals of the same species, and along the spinal column, and even between the sides of individual vertebrae. Here’s an example that we touched on in Wedel and Taylor (2013), but which is seen in all its glory here:

Taylor and Wedel (2021: Figure 5). Giraffatitan brancai tail MB.R.5000, part of the mounted skeleton at the Museum für Naturkunde Berlin. Caudal vertebrae 24–26 in left lateral view. While caudal 26 has no pneumatic features, caudal 25 has two distinct pneumatic fossae, likely excavated around two distinct vascular foramina carrying an artery and a vein. Caudal 24 is more shallowly excavated than 25, but may also exhibit two separate fossae.

But bone is usually the least variable material in the vertebrate body. Muscles vary more, nerves more again, and blood vessels most of all. So why are the vertebrae of sauropods so much more variable than other bones?

Our new paper, published today (Taylor and Wedel 2021) proposes an answer! Please read it for the details, but here’s the summary:

  • Early in ontogenly, the blood supply to vertebrae comes from arteries that initially served the spinal cord, penetrating the bone of the neural canal.
  • Later in ontegeny, additional arteries penetrate the centra, leaving vascular foramina (small holes carrying blood vessels).
  • This hand-off does not always run to completion, due to the variability of blood vessels.
  • In extant birds, when pneumatic diverticula enter the bone they do so via vascular foramina, alongside blood vessels.
  • The same was probaby true in sauropods.
  • So in vertebrae that got all their blood supply from vascular foramina in the neural canal, diverticula were unable to enter the centra from the outside.
  • So those centra were never pneumatized from the outside, and no externally visible pneumatic cavities were formed.

Somehow that pretty straightforward argument ended up running to eleven pages. I guess that’s what you get when you reference your thoughts thoroughly, illustrate them in detail, and discuss the implications. But the heart of the paper is that little bullet-list.

Taylor and Wedel (2021: Figure 6). Domestic duck Anas platyrhynchos, dorsal vertebrae 2–7 in left lateral view. Note that the two anteriormost vertebrae (D2 and D3) each have a shallow pneumatic fossa penetrated by numerous small foramina.

(What is the relevance of these duck dorsals? You will need to read the discussion in the paper to find out!)

Our choice of publication venue

The world moves fast. It’s strange to think that only eleven years ago my Brachiosaurus revision (Taylor 2009) was in the Journal of Vertebrate Palaeontology, a journal that now feels very retro. Since then, Matt and I have both published several times in PeerJ, which we love. More recently, we’ve been posting preprints of our papers — and indeed I have three papers stalled in peer-review revisions that are all available as preprints (two Taylor and Wedels and a single sole-authored one). But this time we’re pushing on even further into the Shiny Digital Future.

We’ve published at Qeios. (It’s pronounced “chaos”, but the site doesn’t tell you that; I discovered it on Twitter.) If you’ve not heard of it — I was only very vaguely aware of it myself until this evening — it runs on the same model as the better known F1000 Research, with this very important difference: it’s free. Also, it looks rather slicker.

That model is: publish first, then filter. This is the opposite of the traditional scholarly publishing flow where you filter first — by peer reviewers erecting a series of obstacles to getting your work out — and only after negotiating that course to do get to see your work published. At Qeios, you go right ahead and publish: it’s available right off the bat, but clearly marked as awaiting peer-review:

And then it undergoes review. Who reviews it? Anyone! Ideally, of course, people with some expertise in the relevant fields. We can then post any number of revised versions in response to the reviews — each revision having its own DOI and being fixed and permanent.

How will this work out? We don’t know. It is, in part, an experiment. What will make it work — what will impute credibility to our paper — is good, solid reviews. So if you have any relevant expertise, we do invite you to get over there and write a review.

And finally …

Matt noted that I first sent him the link to the Qeios site at 7:44 pm my time. I think that was the first time he’d heard of it. He and I had plenty of back and forth on where to publish this paper before I pushed on and did it at Qeios. And I tweeted that our paper was available for review at 8:44 — one hour exactly after Matt learned that the venue existed. Now here we are at 12:04 my time, three hours and 20 minutes later, and it’s already been viewed 126 times and downloaded 60 times. I think that’s pretty awesome.

References

  • Taylor, Michael P. 2009. A re-evaluation of Brachiosaurus altithorax Riggs 1903 (Dinosauria, Sauropoda) and its generic separation from Giraffatitan brancai (Janensch 1914). Journal of Vertebrate Paleontology 29(3):787-806. [PDF]
  • Taylor, Michael P., and Mathew J. Wedel. 2021. Why is vertebral pneumaticity in sauropod dinosaurs so variable? Qeios 1G6J3Q. doi: 10.32388/1G6J3Q [PDF]
  • Wedel, Mathew J., and Michael P. Taylor 2013b. Caudal pneumaticity and pneumatic hiatuses in the sauropod dinosaurs Giraffatitan and Apatosaurus. PLOS ONE 8(10):e78213. 14 pages. doi: 10.1371/journal.pone.0078213 [PDF]

Can we distinguish taphonomic distortion and (paleo)pathology from normal biological variation?

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Taylor 2015: Figure 8. Cervical vertebrae 4 (left) and 6 (right) of Giraffatitan brancai lectotype MB.R.2180 (previously HMN SI), in posterior view. Note the dramatically different aspect ratios of their cotyles, indicating that extensive and unpredictable crushing has taken place. Photographs by author.

Here are cervicals 4 and 8 from MB.R.2180, the big mounted Giraffatitan in Berlin. Even though this is one of the better sauropod necks in the world, the vertebrae have enough taphonomic distortion that trying to determine what neutral, uncrushed shape they started from is not easy.

Wedel and Taylor 2013b: Figure 3. The caudal vertebrae of ostriches are highly pneumatic. This mid-caudal vertebra of an ostrich (Struthio camelus), LACM Bj342, is shown in dorsal view (top), anterior, left lateral, and posterior views (middle, left to right), and ventral view (bottom). The vertebra is approximately 5cm wide across the transverse processes. Note the pneumatic foramina on the dorsal, ventral, and lateral sides of the vertebra.

Here’s one of the free caudal vertebrae of an ostrich, Struthio camelus, LACM Ornithology Bj342. It’s a bit asymmetric–the two halves of the neural spine are aimed in slightly different directions, and one transverse process is angled just slightly differently than the other–but the asymmetry is pretty subtle and the rest of the vertebral column looks normal, so I don’t think this rises to the level of pathology. It looks like the kind of minor variation that is present in all kinds of animals, especially large-bodied ones.

This is a dorsal vertebra of a rhea, Rhea americana, LACM Ornithology 97479, in posteroventral view. Ink pen for scale. I took this photo to document the pneumatic foramina and related bone remodeling on the dorsal roof of the neural canal, but I’m showing it here because in technical terms this vert is horked. It’s not subtly asymmetric, it’s grossly so, with virtually every feature–the postzygapophyses, diapophyses, parapophyses, and even the posterior articular surface of the centrum–showing fairly pronounced differences from left to right.

That rhea dorsal looks pretty bad for dry bone from a recently-dead extant animal, but if it was from the Morrison Formation it would be phenomenal. If I found a sauropod vertebra that looked that good, I’d think, “Hey, this thing’s in pretty good shape! Only a little distorted.” The roughed-up surface of the right transverse process might give me pause, and I’d want to take a close look at those postzygs, but most of this asymmetry is consistent with what I’d expect from taphonomic distortion.

Which brings me to my titular question, which I am asking out of genuine ignorance and not in a rhetorical or leading way: can we tell these things apart? And if so, with what degree of confidence? I know there has been a lot of work on 3D retrodeformation over the past decade and a half at least, but I don’t know whether this specific question has been addressed.

Corollary question: up above I wrote, “It looks like the kind of minor variation that is present in all kinds of animals, especially large-bodied ones”. My anecdotal experience is that the vertebrae of large extant animals tend to be more asymmetric than those of small extant animals, but I don’t know if that’s a real biological phenomenon–bone is bone but big animals have larger forces working on their skeletons, and they typically live longer, giving the skeleton more time to respond to those forces–OR if the asymmetry is the same in large and small animals and it’s just easier to see in the big ones.

If either of those questions has been addressed, I’d be grateful for pointers in the comments, and thanks in advance. If one or both have not been addressed, I think they’re interesting but Mike and I have plenty of other things to be getting on with and we’re not planning to work on either one, hence the “Hey, you! Want a project?” tag.

References

Happy Valentine’s Day from Apatosaurinae

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This is RAM 1619, a proximal caudal vertebra of an apatosaurine, in posterior view. It’s one of just a handful of sauropod specimens at the Raymond M. Alf Museum of Paleontology. It’s a donated specimen, which came with very little documentation. It was originally catalogued only to a very gross taxonomic level, but I had a crack at it on a collections visit in 2018, when I took these photos. I told Andy Farke and the other Alf folks right away, I just never got around to blogging about it until now.

Why do I think it’s an apatosaurine? A few reasons: 

  • it’s slightly procoelous, which is pretty common for diplodocids, whereas caudals of Haplocanthosaurus, Camarasaurus, and Brachiosaurus are all either amphicoelous or amphiplatyan;
  • it has big pneumatic fossae above the transverse processes, unlike Haplo, Cam, and Brachio, but it lacks big pneumatic fossae below the transverse processes, unlike Diplodocus and Barosaurus
  • and finally the clincher: the centrum is taller than wide, and broader dorsally than ventrally.

In the literature this centrum shape is described as ‘heart-shaped’ (e.g., Tschopp et al. 2015), and sometimes there is midline dorsal depression that really sells it. That feature isn’t present in this vert, but overall it’s still much closer to a heart-shape than the caudals of any non-apatosaurine in the Morrison. Hence the literal 11th-hour Valentine’s Day post (and yes, this will go up with a Feb. 15 date because SV-POW! runs on England time, but it’s still the 14th here in SoCal, at least for another minute or two).

RAM 1619 in postero-dorsal view.

Back to the pneumaticity. Occasionally an apatosaurine shows up with big lateral fossae ventral to the transverse processes–the mounted one at the Field Museum is a good example (see this post). And the big Oklahoma apatosaurine breaks the rules by having very pneumatic caudals–more on that in the future. But at least in the very proximal caudals of non-gigantic apatosaurines, it’s more common for there to be pneumatic fossae above the transverse processes, near the base of the neural arch. You can see that in caudal 3 of UWGM 15556/CM 563, a specimen of Brontosaurus parvus:

I don’t think I’d figured out this difference between above-the-transverse-process (supracostal, perhaps) and below-the-transverse-process (infracostal, let’s say) pneumatic fossae when Mike and I published our caudal pneumaticity paper back in 2013. I didn’t start thinking seriously about the dorsal vs ventral distribution of pneumatic features until sometime later (see this post). And I need to go check my notes and photos before I’ll feel comfortable calling supracostal fossae the apatosaurine norm. But I am certain that Diplodocus and Barosaurus have big pneumatic foramina on the lateral faces of their proximal caudals (see this post, for example), Haplocanthosaurus and brachiosaurids have infracostal fossae when they have any fossae at all in proximal caudals (distally the fossae edge up to the base of the neural arch in Giraffatitan), and to date there are no well-documented cases of caudal pneumaticity in Camarasaurus (if that seems like a hedge, sit tight and W4TP). 

RAM 1619 has asymmetric pneumatic fossae, which is pretty cool, and also pretty common, and we think we have a hypothesis to explain that now–see Mike’s and my new paper in Qeios.

And if I’m going to make my midnight deadline, even on Pacific Time, I’d best sign off. More cool stuff inbound real soon.

References


How can we get post-publication peer-review to happen?

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Today marks the one-month anniversary of my and Matt’s paper in Qeios about why vertebral pneumaticity in sauropods is so variable. (Taylor and Wedel 2021). We were intrigued to publish on this new platform that supports post-publication peer-review, partly just to see what happened.

Taylor and Wedel (2021: figure 3). Brontosaurus excelsus holotype YPM 1980, caudal vertebrae 7 and 8 in right lateral view. Caudal 7, like most of the sequence, has a single vascular foramen on the right side of its centrum, but caudal 8 has two; others, including caudal 1, have none.

So what has happened? Well, as I write this, the paper has been viewed 842 times, downloaded a healthy 739 times, and acquired an altmetric score 21, based rather incestuously on two SV-POW! blog-posts, 14 tweets and a single Mendeley reader.

What hasn’t happened is even a single comment on the paper. Nothing that could be remotely construed as a post-publication peer-review. And therefore no progress towards our being able to count this as a peer-reviewed publication rather than a preprint — which is how I am currently classifying it in my publications list.

This, despite our having actively solicited reviews both here on SV-POW!, in the original blog-post, and in a Facebook post by Matt. (Ironically, the former got seven comments and the latter got 20, but the actual paper none.)

I’m not here to complain; I’m here to try to understand.

On one level, of course, this is easy to understand: writing a more-than-trivial comment on a scholarly article is work, and it garners very little of the kind of credit academics care about. Reputation on the Qeios site is nice, in a that-and-two-bucks-will-buy-me-a-coffee kind of way, but it’s not going to make a difference to people’s CVs when they apply for jobs and grants — not even in the way that “Reviewed for JVP” might. I completely understand why already overworked researchers don’t elect to invest a significant chunk of time in voluntarily writing a reasoned critique of someone else’s work when they could be putting that time into their own projects. It’s why so very few PLOS articles have comments.

On the other hand, isn’t this what we always do when we write a solicited peer-review for a regular journal?

So as I grope my way through this half-understood brave new world that we’re creating together, I am starting to come to the conclusion that — with some delightful exceptions — peer-review is generally only going to happen when it’s explicitly solicited by a handling editor, or someone with an analogous role. No-one’s to blame for this: it’s just reality that people need a degree of moral coercion to devote that kind of effort to other people’s project. (I’m the same; I’ve left almost no comments on PLOS articles.)

Am I right? Am I unduly pessimistic? Is there some other reason why this paper is not attracting comments when the Barosaurus preprint did? Teach me.

References

 

Good experiences of peer-review at Qeios

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A month after I and Matt published our paper “Why is vertebral pneumaticity in sauropod dinosaurs so variable?” at Qeios, we were bemoaning how difficult it was to get anyone to review it. But what a difference the last nineteen days have made!

In that time, we’ve had five reviews, and posted three revisions: revision 2 in response to a review by Mark McMenamin, version 3 in response to a review by Ferdinand Novas, and version 4 in response to reviews by Leonardo Cotts, by Alberto Collareta, and by Eduardo Jiménez-Hidalgo.

Taylor and Wedel (2021: Figure 2). Proximal tail skeleton (first 13 caudal vertebrate) of LACM Herpetology 166483, a juvenile specimen of the false gharial Tomistoma schlegelii. A: close-up of caudal vertebrae 4–6 in right lateral view, red circles highlighting vascular foramina: none in Ca4, two in Ca5 and one in Ca6. B: right lateral view. C: left lateral view (reversed). D: close-up of caudal vertebrae 4–6 in left lateral view (reversed), red circles highlighting vascular foramina: one each in Ca4, Ca5 and Ca6. In right lateral view, vascular foramina are apparent in the centra of caudal vertebrae 5–7 and 9–11; they are absent or too small to make out in vertebrae 1–4, 8 and 12–13. In left lateral view (reversed), vascular foramina are apparent in the centra of caudal vertebrae 4–7 and 9; they are absent or too small to make out in vertebrae 1–3, 8, and 10–13. Caudal centra 5–7 and 9 are therefore vascularised from both sides; 4 and 10–11 from one side only; and 1–3, 8 and 12–13 not at all.

There are a few things to say about this.

First, this is now among our most reviewed papers. Thinking back across all my publications, most have been reviewed by two people; the original Xenoposeidon description was reviewed by three; the same was true of my reassessment of Xenoposeidon as a rebbachisaur, and there may have been one or two more that escape me at the moment. But I definitely can’t think of any papers that have been under five sets of eyes apart from this one in Qeios.

Now I am not at all saying that all five of the reviews on this paper are as comprehensive and detailed as a typical solicited peer review at a traditional journal. Some of them have detailed observations; others are much more cursory. But they all have things to say — which I will return to in my third point.

Second, Qeios has further decoupled the functions of peer review. Traditional peer review combines three rather separate functions: A, Checking that the science is sound before publishing it; B, assessing whether it’s a good fit for the journal (often meaning whether it’s sexy enough); and C, helping the authors to improve the work. When PLOS ONE introduced correctness-only peer-review, they discarded B entirely, reasoning correctly that no-one knows which papers will prove influential[1]. Qeios goes further by also inverting A. By publishing before the peer reviews are in (or indeed solicited), it takes away the gatekeeper role of the reviewers, leaving them with only function C, helping the authors to improve the work. Which means it’s no surprise that …

Third, all five reviews have been constructive. As Matt has written elsewhere, “There’s no way to sugar-coat this: getting reviews back usually feels like getting kicked in the gut”. This is true, and we both have a disgraceful record of allowing harshly-reviewed projects to sit fallow for far too long before doing the hard work of addressing the points made by the reviewers and resubmitting[2].

The contrast with the reviews from Qeios has been striking. Each one has sent me scampering back to the manuscript, keen to make (most of) the suggested changes — hence the three revised versions that I’ve posted in the last fortnight. I think there are at least two reasons for this, a big one and a small one.

  • The big reason, I think, is that the reviewers know their only role is to improve the paper. Well, that’s not quite true: they also have some influence over its evaluation, both in what they write and in assigning a 1-to-5 star score. But they know when they’re writing their reviews that whatever happens, they won’t block publication. This means, firstly, that there is no point in their writing something like “This paper should not be published until the authors do X”; but equally importantly, I think it puts reviewers in a different and more constructive mindset. They feel themselves to be allies of the authors rather than (as can happen) adversaries.
  • The smaller reason is it’s easier to deal with one review at a time. I understand why journals solicit multiple reviews: so the handling editor can consider them all in reaching a decision. I understand why the authors get all the reviews back at once. But that process can’t help but be discouraging: because, once the decision has been made, they’re all on hand and there’s no point in stringing them out. One at a time may not be better, exactly; but it’s emotionally easier.

Is this all upside? Well, it’s too early to say. We’ve only done this once. The experience has certainly been more pleasant — and, crucially, much more efficient — than the traditional publishing lifecycle. But I’m aware of at least two potential drawbacks:

First, the publish-first lifecycle could be exploited by cranks. If the willingness to undergo peer-review is the mark of seriousness in a researcher — and if non-serious researchers are unwilling to face that gauntlet — then a venue that lets you make an end-run around peer-review is an obvious loophole. How serious a danger is this? Only time will tell, but I am inclined to think maybe not too serious. Bad papers on a site like Qeios will attract negative reviews and low scores, especially if they start to get noticed in the mainsteam media. They won’t be seen as having the stamp of having passed peer-review; rather, they will be branded with having publicly failed peer-review.

Second, it’s still not clear where reviewers will come from. We wrote about this problem in some detail last month, and although it’s worked out really well for our present paper, that’s no guarantee that it will always work out this well. We know that Qeios itself approached at least one reviewer to solicit their comments: that’s great, and if they can keep doing this then it will certainly help. But it probably won’t scale, so either a different reviewing culture will need to develop, or we will need people who — perhaps only on an informal basis — take it on themselves to solicit reviews from others. We’re interested to see how this develops.

Anyway, Matt and I have found our first Qeios experience really positive. We’ve come out of it with what I think is a good paper, relatively painlessly, and with much less friction than the usual process. I hope that some of you will try it, too. To help get the process rolling, I personally undertake to review any Qeios article posted by an SV-POW! reader. Just leave a comment here to let me know about your article when it’s up.

 

Notes

[1] “No-one knows which papers will prove influential”. As purely anecdotal evidence for this claim: when I wrote “Sauropod dinosaur research: a historical review” for the Geological Society volume Dinosaurs: A Historical Perspective, I thought it might become a citation monster. It’s done OK, but only OK. Conversely, it never occurred to me that “Head and neck posture in sauropod dinosaurs inferred from extant animals” would be of more than specialist interest, but it’s turned out to be my most cited paper. I bet most researchers can tell similar stories.

[2] One example: my 2015 preprint on the incompleteness of sauropod necks was submitted for publication in October 2015, and the reviews[3] came back that same month. Five and a half years later, I am only now working on the revision and resubmission. If you want other examples, we got ’em. I am not proud of this.

[3] I referred above to “harsh reviews” but in fact the reviews for this paper were not harsh; they were hard, but 100% fair, and I found myself agreeing with about 90% of the criticisms. That has certainly not been true of all the reviews I have found disheartening!

 

Amazing things are out there waiting to be noticed

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It is said that, some time around 1590 AD, Galileo Galilei dropped two spheres of different masses from the Leaning Tower of Pisa[1], thereby demonstrating that they fell at the same rate. This was a big deal because it contradicted Aristotle’s theory of gravity, in which objects are supposed to fall at a speed proportional to their mass.

Aristotle lived from 384–322 BC, which means his observably incorrect theory had been scientific orthodoxy for more than 1,900 years before being overturned[2].

How did this happen? For nearly two millennia, every scientist had it in his power to hold a little stone in one hand and a rock in the other, drop them both, and see with his own eyes that they fell at the same speed. Aristotle’s theory was obviously wrong, yet that obviously wrong theory remained orthodox for eighty generations.

My take is that it happened because people — even scientists — have a strong tendency to trust respected predecessors, and not even to look to see whether their observations and theories are correct. I am guessing that in that 1,900 years, plenty of scientists did indeed do the stone-and-rock experiment, but discounted their own observations because they had too much respect for Aristotle.

But even truly great scientists can be wrong.

Now, here is the same story, told on a much much smaller scale.

Well into the 2010s, it was well known that in sauropods, caudal vertebrae past the first handful are pneumatized only in diplodocines and in saltasaurine titanosaurs. As a bright young sauropod researcher, for example, I knew this from the codings in important and respected phylogenetic analysis such as those of Wilson (2002) and Upchurch et al. (2004).

Until the day I visited the Museum für Naturkunde Berlin and actually, you know, looked at the big mounted Giraffatitan skeleton in the atrium. And this is what I saw:

That’s caudal vertebrae 24–26 in left lateral view, and you could not wish to see a nicer, clearer pneumatic feature than the double foramen in caudal 25.

That observation led directly to Matt’s and my 2013 paper on caudal pneumaticity in Giraffatitan and Apatosaurus (Wedel and Taylor 2013) and clued us into how much more common pneumatic hiatuses are then we’d realised. It also birthed the notion of “cryptic diverticula” — those whose traces are not directly recorded in the fossils, but whose presence can be inferred by traces on other vertebrae. And that led to our most recent paper on pneumatic variation in sauropods (Taylor and Wedel 2021) — from which you might recognise the photo above, since a cleaned-up version of it appears there as Figure 5.

The moral

Just because “everyone knows” something is true, it doesn’t necessarily mean that it actually is true. Verify. Use your own eyes. Even Aristotle can be wrong about gravity. Even Jeff Wilson and Paul Upchurch can be wrong about caudal pneumaticity in non-diplodocines. That shouldn’t in any way undermine the rightly excellent reputations they have built. But we sometimes need to look past reputations, however well earned, to see what’s right in front of us.

Go and look at fossils. Does what you see contradict what “everyone knows”? Good! You’ve discovered something!

 

References

Notes

1. There is some skepticism about whether Galileo’s experiment really took place, or was merely a thought experiment. But since the experiment was described by Galileo’s pupil Vincenzo Viviani in a biography written in 1654, I am inclined to trust the contemporary account ahead of the unfounded scepticism of moderns. Also, Viviani’s wording, translated as “Galileo showed this by repeated experiments made from the height of the Leaning Tower of Pisa in the presence of other professors and all the students” reads like a documentary account rather than a romanticization. And a thought experiment, with no observable result, would not have demonstrated anything.

2. Earlier experiments had similarly shown that Aristotle’s gravitational theory was wrong, including in the works of John Philoponus in the sixth century — but Aristotle’s orthodoxy nevertheless survived until Galileo.

 

Haplocanthosaurus neural canals are weird, part 1: in which we tell the world

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A. Recovered skeletal elements of Haplocanthosaurus specimen MWC 8028. B. Caudal vertebra 3 in right lateral view. C. The same vertebra in posterior view. Lines show the location of sections for D and E. D. Midsagittal CT slice. The arrow indicates the ventral expansion of the neural canal into the centrum. E. Horizontal CT slice at the level of the neural arch pedicles, with anterior toward the top. Arrows indicate the lateral expansions of the neural canal into the pedicles. B-E are shown at the same scale. Wedel et al. (2021: fig. 1).

New paper out today:

Wedel, Mathew; Atterholt, Jessie; Dooley, Jr., Alton C.; Farooq, Saad; Macalino, Jeff; Nalley, Thierra K.; Wisser, Gary; and Yasmer, John. 2021. Expanded neural canals in the caudal vertebrae of a specimen of Haplocanthosaurus. Academia Letters, Article 911, 10pp. DOI: 10.20935/AL911 (link)

The paper is new, but the findings aren’t, particularly. They’re essentially identical to what we reported in our 1st Paleo Virtual Conference slide deck and preprint, and in the “Tiny Titan” exhibit at the Western Science Center, just finally out in a peer-reviewed journal, with better figures. The paper is open access and free to the world, and it’s short, about 1600 words, so this recap will be short, too.

A. Photograph of a 3D-printed model of the first three caudal vertebrae of Haplocanthosaurus specimen MWC 8028, including endocasts of the neural canal (yellow) and intervertebral joints (blue), in right lateral view, and with the neural canal horizontal. B. Diagram of the same vertebrae in midsagittal section, emphasizing the volumes of the neural canal (yellow) and intervertebral joint spaces (blue). Anterior is to the right. Wedel et al. (2021: fig. 2).

John Foster and I described Museum of Western Colorado (MWC) specimen 8028, a partial skeleton of Haplocanthosaurus from Snowmass, Colorado, in late 2014. One weird thing about that specimen (although not the only weird thing) is that the neural canals of the tail vertebrae are bizarrely expanded. In most vertebrae of most critters, the neural canal is a cylindrical tunnel, but in these vertebrae the neural canals are more like spherical vacuities.

John and I didn’t know what to make of that back in 2014. But a few years later I started working with Jessie Atterholt on bird anatomy, which led me to do a little project on the whole freaking zoo of weird stuff that birds and other dinosaurs do with their neural canals, which led to the 1PVC presentation, which led to this. 

Caudal vertebra 3 of Haplocanthosaurus specimen MWC 8028 in left posterolateral (A), posterior (B), and right posterolateral (C) views, with close-ups (D and E). In A and B, a paintbrush is inserted into one of the lateral recesses, showing that the neural canal is wider internally than at either end. Wedel et al. (2021: fig. 3).

Of course there will be more posts and more yapping, as signaled by the ‘Part 1’ in the post title. Although I am extremely satisfied with the streamlined, 1600-word missile of information and reasoning that just dropped, there are parts that I want to unpack, that haven’t been unpacked before. But the paper launched at midnight-thirty, Pacific Daylight Time, I’m up way too late finishing this first post, and I reckon the rest will keep for a few hours at least.

Anatomical features of the neural canal in birds and other dinosaurs. A. MWC 9698, a mid caudal vertebra of Apatosaurus in posterodorsal view. Arrows highlight probable vascular foramina in the ventral floor of the neural canal. B. LACM 97479, a dorsal vertebra of Rhea americana in left anterolateral view. Arrows highlight pneumatic foramina inside the neural canal. C. A hemisected partial synsacrum of a chicken, Gallus domesticus, obtained from a grocery store. Anterior is to the right. The bracket shows the extent of the dorsal recess for the glycogen body, which only spans four vertebrae. Arrows highlight the transverse grooves in the roof of the neural canal for the lumbosacral organ. D. Sagittal (left) and transverse (right) CT slices through the sacrum of a juvenile ostrich, Struthio camelus. The bracket shows the extent of the lumbosacral expansion of the spinal cord. Indentations in the roof of the neural canal house the lumbosacral organ. In contrast to the chicken, the ostrich has a small glycogen body that does not leave a distinct osteological trace. Yellow arrows show the longitudinal troughs in the ventral floor of the neural canal that house the ventral eminences of the spinal cord. Wedel et al. (2021: fig. 4).

I have a ton of people to thank. John Foster, obviously, for initiating the line of research that led here. Julia McHugh for access to the MWC collections, and for being an excellent sounding board regarding the Morrison Formation, sauropod dinosaurs, and crafting ambitious but tractable research projects. Anne Weil for helping me be methodical in thinking through the logic of the paper, and Mike Taylor for helping me get it polished. Niels Bonde, Steven Jasinski, and David Martill for constructive reviews, which were published alongside the paper. We couldn’t take all of their suggestions because of space limitations, but figures 3 and 4 were born because they asked for them, and that’s not a small thing. Vicki and London Wedel for putting up with me at various points in this project, especially in the last few days as I’ve been going bonkers correcting page proofs. And finally, because I’m the one writing this blog post, my coauthors: Jessie Atterholt, Alton Dooley, Saad Farooq, Jeff Macalino, Thierra Nalley, Gary Wisser, and John Yasmer, for their contributions and for their patience during the unusually long gestation of this very short paper.

More to say about all that in the future. For now, yay, new paper. Have fun with it. Here’s the link again.

References

Pneumatization sites: how does air get into vertebrae?

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Science doesn’t always get done in the right order.

In the course of the research for my paper with Mike this past spring, “Why is vertebral pneumaticity in sauropod dinosaur so variable?”, published in Qeios in January, I had a couple of epiphanies. The first was that I had collated enough information to map the sites at which arteries and veins enter and exit the vertebrae in most tetrapods. The second was that, having done that, I’d also made a map of (almost) all the places that diverticula enter the vertebrae to pneumatize them. This is obviously related to the thesis we laid out in that paper, that postcranial skeletal pneumaticity is so variable because pneumatic diverticula follow pre-existing blood vessels as they develop, and blood vessels themselves are notoriously variable. In fact, if you had to summarize that thesis in one diagram, it would probably look like the one above, which I drew by hand in my research notebook in early March.

Only that’s not quite correct. I didn’t have those epiphanies “in the course of the research”, I had them after the pneumatic variation paper was done and published. And at the time they felt less like epiphanies and more like a series of “Holy crap” realizations:

  1. Holy crap, that diagram would have been really helpful when we were writing the pneumatic variation paper, since it establishes, almost tautologically, that diverticula invade vertebrae where blood vessels already have. In a rational world, Mike and I would have done this project first, and the pneumatic variation paper would have stood on its shoulders.
  2. Holy crap, how have I been working on vertebral pneumaticity for more than two decades without ever creating a map of all the places a vertebra can be pneumatized, or even realizing that such a map would be useful?
  3. Holy crap, how have I been working on dinosaur bones — and specifically their associated soft tissues — for more than two decades without wondering exactly how the blood was getting into and out of each bone? 

Arguably, not only should Mike and I have done this project first, I should have taken a stab at it way back when I was working on my Master’s thesis. Better late than never, I guess.

I used a sauropod caudal as my vertebral archetype because it has all the bits a tetrapod vertebra can have, including the hemal arch or chevron. This was important, because Zurriaguz et al. (2017) demonstrated that the chevrons are pneumatic in some titanosaurs. 

 

For the actual presentation I redrew the vessels on top of a scan of a Camarasaurus caudal from Marsh, which Mike found and cleaned up (modified from Marsh 1896: plate 34, part 4, and plate 39, part 3c). 

We deliberately used an unfused caudal to emphasize that ‘ribs’ — technically, costal elements — are present, they just fuse to the neural arch and centrum rather than remaining separate, mobile elements like dorsal ribs.

Anyway, I’m yapping about this now because this project is rolling: Mike and I submitted an abstract on it for the 3rd Palaeontological Virtual Congress, and a short slideshow on the project is now up at the 3PVC site for attendees to look at and comment on. The congress started last Wednesday and runs through Dec. 15, after which I’m sure we’ll submit the abstract and slide deck somewhere as a preprint, and then turn it into a paper as quickly as possible.

I’ll probably have more to say on this in a day or so, but for now the comment field is open, and your thoughts are welcome.

References

 

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